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Creators/Authors contains: "Hamilton, Scott"

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  1. Abstract Solutions for scalable, high-performance optical control are important for the development of scaled atom-based quantum technologies. Modulation of many individual optical beams is central to applying arbitrary gate and control sequences on arrays of atoms or atom-like systems. At telecom wavelengths, miniaturization of optical components via photonic integration has pushed the scale and performance of classical and quantum optics far beyond the limitations of bulk devices. However, material platforms for high-speed telecom integrated photonics lack transparency at the short wavelengths required by leading atomic systems. Here, we propose and implement a scalable and reconfigurable photonic control architecture using integrated, visible-light modulators based on thin-film lithium niobate. We combine this system with techniques in free-space optics and holography to demonstrate multi-channel, gigahertz-rate visible beamshaping. When applied to silicon-vacancy artificial atoms, our system enables the spatial and spectral addressing of a dynamically-selectable set of these stochastically-positioned point emitters. 
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    Free, publicly-accessible full text available December 1, 2026
  2. Abstract Structure‐forming foundation species facilitate consumers by providing habitat and refugia. In return, consumers can benefit foundation species by reducing top‐down pressures and increasing the supply of nutrients. Consumer‐mediated nutrient dynamics (CND) fuel the growth of autotrophic foundation species and generate more habitat for consumers, forming reciprocal feedbacks. Such feedbacks are threatened when foundation species are lost to disturbances, yet testing these interactions requires long‐term studies, which are rare. Here, we experimentally evaluated how disturbance to giant kelp, a marine foundation species, affects (1) CND of the forest animal community and (2) nutrient feedbacks that help sustain forest primary production during extended periods of low nitrate. Our experiment involved removing giant kelp annually during the winter for 10 years at four sites to mimic frequent wave disturbance. We paired temporal changes in the forest community in kelp removal and control plots with estimates of taxon‐specific ammonium excretion rates (reef fishes and macroinvertebrates) and nitrogen (N) demand (giant kelp and understory macroalgae) to determine the effects of disturbance on CND as measured by ammonium excretion, N demand by kelp forest macroalgae, and the percentage of nitrogen demand met by ammonium excretion. We found that disturbance to giant kelp decreased ammonium excretion by 66% over the study, mostly due to declines in fishes. Apart from a few fish species that dominated CND, most reef‐associated consumers were unaffected by disturbance. Disturbance to giant kelp reduced its N demand by 56% but increased that of the understory by 147% due to its increased abundance in the absence of a kelp canopy. Overall, disturbance had little effect on the fraction of N demand of macroalgae met by consumer excretion due to the offsetting responses of giant kelp, understory macroalgae, and consumers to disturbance. Across both disturbance regimes, on average, consumers supported 11%–12% of the N required by all kelp forest macroalgae and 48% of N demand by the understory macroalgae (which are confined to the benthos where most reef‐associated consumers reside). Our findings suggest that CND constitutes a considerable contribution of N required in kelp forests, yet nutrient inputs decrease following reductions in essential habitat perpetuated by frequent disturbances. 
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    Free, publicly-accessible full text available March 1, 2026
  3. Abstract Marine protected areas (MPAs) are widely implemented tools for long‐term ocean conservation and resource management. Assessments of MPA performance have largely focused on specific ecosystems individually and have rarely evaluated performance across multiple ecosystems either in an individual MPA or across an MPA network. We evaluated the conservation performance of 59 MPAs in California's large MPA network, which encompasses 4 primary ecosystems (surf zone, kelp forest, shallow reef, deep reef) and 4 bioregions, and identified MPA attributes that best explain performance. Using a meta‐analytic framework, we evaluated the ability of MPAs to conserve fish biomass, richness, and diversity. At the scale of the network and for 3 of 4 regions, the biomass of species targeted by fishing was positively associated with the level of regulatory protection and was greater inside no‐take MPAs, whereas species not targeted by fishing had similar biomass in MPAs and areas open to fishing. In contrast, species richness and diversity were not as strongly enhanced by MPA protection. The key features of conservation effectiveness included MPA age, preimplementation fisheries pressure, and habitat diversity. Important drivers of MPA effectiveness for single MPAs were consistent across MPAs in the network, spanning regions and ecosystems. With international targets aimed at protecting 30% of the world's oceans by 2030, MPA design and assessment frameworks should consider conservation performance at multiple ecologically relevant scales, from individual MPAs to MPA networks. 
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    Free, publicly-accessible full text available August 1, 2026
  4. Solid-state quantum emitters have emerged as a leading quantum memory for quantum networking applications. However, standard optical characterization techniques are neither efficient nor repeatable at scale. Here we introduce and demonstrate spectroscopic techniques that enable large-scale, automated characterization of colour centres. We first demonstrate the ability to track colour centres by registering them to a fabricated machine-readable global coordinate system, enabling a systematic comparison of the same colour centre sites over many experiments. We then implement resonant photoluminescence excitation in a widefield cryogenic microscope to parallelize resonant spectroscopy, achieving two orders of magnitude speed-up over confocal microscopy. Finally, we demonstrate automated chip-scale characterization of colour centres and devices at room temperature, imaging thousands of microscope fields of view. These tools will enable the accelerated identification of useful quantum emitters at chip scale, enabling advances in scaling up colour centre platforms for quantum information applications, materials science and device design and characterization. 
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  5. We demonstrate heterogeneous integration of solid-state nanophotonic cavities into a scalable photonic platform as an efficient optical interface for quantum memories based on diamond color centers. 
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  6. Lutermann, Heike (Ed.)
    The unusual blue color polymorphism of lingcod ( Ophiodon elongatus ) is the subject of much speculation but little empirical research; ~20% of lingcod individuals exhibit this striking blue color morph, which is discrete from and found within the same populations as the more common brown morph. In other species, color polymorphisms are intimately linked with host–parasite interactions, which led us to ask whether blue coloration in lingcod might be associated with parasitism, either as cause or effect. To test how color and parasitism are related in this host species, we performed parasitological dissection of 89 lingcod individuals collected across more than 26 degrees of latitude from Alaska, Washington, and California, USA. We found that male lingcod carried 1.89 times more parasites if they were blue than if they were brown, whereas there was no difference in parasite burden between blue and brown female lingcod. Blue individuals of both sexes had lower hepatosomatic index (i.e., relative liver weight) values than did brown individuals, indicating that blueness is associated with poor body condition. The immune systems of male vertebrates are typically less effective than those of females, due to the immunocompromising properties of male sex hormones; this might explain why blueness is associated with elevated parasite burdens in males but not in females. What remains to be determined is whether parasites induce physiological damage that produces blueness or if both blue coloration and parasite burden are driven by some unmeasured variable, such as starvation. Although our study cannot discriminate between these possibilities, our data suggest that the immune system could be involved in the blue color polymorphism–an exciting jumping-off point for future research to definitively identify the cause of lingcod blueness and a hint that immunocompetence and parasitism may play a role in lingcod population dynamics. 
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  7. We present an efficient microwave and optical interface for quantum memories at 1.3 K based on tin-vacancy color centers in diamond and scalable integrated photonics. 
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  8. Abstract Understanding species’ responses to upwelling may be especially important in light of ongoing environmental change. Upwelling frequency and intensity are expected to increase in the future, while ocean acidification and deoxygenation are expected to decrease the pH and dissolved oxygen (DO) of upwelled waters. However, the acute effects of a single upwelling event and the integrated effects of multiple upwelling events on marine organisms are poorly understood. Here, we use in situ measurements of pH, temperature, and DO to characterize the covariance of environmental conditions within upwelling‐dominated kelp forest ecosystems. We then test the effects of acute (0–3 days) and chronic (1–3 months) upwelling on the performance of two species of kelp forest grazers, the echinoderm,Mesocentrotus franciscanus, and the gastropod,Promartynia pulligo. We exposed organisms to static conditions in a regression design to determine the shape of the relationship between upwelling and performance and provide insights into the potential effects in a variable environment. We found that respiration, grazing, growth, and net calcification decline linearly with increasing upwelling intensity forM.francicanusover both acute and chronic timescales.Promartynia pulligoexhibited decreased respiration, grazing, and net calcification with increased upwelling intensity after chronic exposure, but we did not detect an effect over acute timescales or on growth after chronic exposure. Given the highly correlated nature of pH, temperature, and DO in the California Current, our results suggest the relationship between upwelling intensity and growth in the 3‐month trial could potentially be used to estimate growth integrated over long‐term dynamic oceanographic conditions forM.franciscanus. Together, these results indicate current exposure to upwelling may reduce species performance and predicted future increases in upwelling frequency and intensity could affect ecosystem function by modifying the ecological roles of key species. 
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